RNAloops

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Details

General information

Loop type:4-way junction
Home structure (PDB id):1bau
Sequence:UGAAG — CACG — UGAAG — CACG
DB notation:(...[ — [..) — (...] — ]..)
Secondary structure view

Secondary structure
3D view

Connecting helix #1
Sequence:U-G
Length (bps):1
First Strand:A-18
Second Strand:A-6
Sequence:GAA
Length (nts):3
Start position:A-7
End position:A-9
Angles between neighbouring helices (#1 and #2)
Euler Angle X:110.192°
Euler Angle Y:118.041°
Euler Angle Z:150.033°
Planar Angle:123.999°
Sequence:G-C
Length (bps):1
First Strand:A-10
Second Strand:B-15
Sequence:AC
Length (nts):2
Start position:A-16
End position:A-17
Angles between neighbouring helices (#2 and #3)
Euler Angle X:101.955°
Euler Angle Y:177.677°
Euler Angle Z:81.82°
Planar Angle:112.852°
Sequence:C-G
Length (bps):1
First Strand:A-15
Second Strand:B-10
Sequence:GAA
Length (nts):3
Start position:B-7
End position:B-9
Angles between neighbouring helices (#3 and #4)
Euler Angle X:112.317°
Euler Angle Y:117.822°
Euler Angle Z:154.77°
Planar Angle:124.623°
Sequence:U-G
Length (bps):1
First Strand:B-18
Second Strand:B-6
Sequence:AC
Length (nts):2
Start position:B-16
End position:B-17
Angles between neighbouring helices (#4 and #1)
Euler Angle X:35.536°
Euler Angle Y:177.896°
Euler Angle Z:137.017°
Planar Angle:137.272°